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Publications

2021 Publications

Kevadiya BD, Machhi J, Herskovitz J, Oleynikov MD, Blomberg WR, Bajwa N, Soni D, Das S, Hasan M, Patel M, Senan AM, Gorantla S, McMillan J, Edagwa B, Eisenberg R, Gurumurthy CB, Reid SPM, Punyadeera C, Chang L, Gendelman HE. Pharmacotherapeutics of SARS-CoV-2 Infections. J Neuroimmune Pharmacol. 2021 Jan 6:1–26. doi: 10.1007/s11481-020-09968-x. Epub ahead of print. PMID: 33403500; PMCID: PMC7785334.

Machhi J, Shahjin F, Das S, Patel M, Abdelmoaty MM, Cohen JD, Singh PA, Baldi A, Bajwa N, Kumar R, Vora LK, Patel TA, Oleynikov MD, Soni D, Yeapuri P, Mukadam I, Chakraborty R, Saksena CG, Herskovitz J, Hasan M, Oupicky D, Das S, Donnelly RF, Hettie KS, Chang L, Gendelman HE, Kevadiya BD. Nanocarrier Vaccines for SARS-CoV-2. Adv Drug Deliv Rev. 2021 Jan 8:S0169-409X(21)00002-8. doi: 10.1016/j.addr.2021.01.002. Epub ahead of print. PMID: 33428995; PMCID: PMC7794055.

Wu X, Bhattacharyya SS, Chen R. WGEVIA: A Graph Level Embedding Method for Microcircuit Data. Front Comput Neurosci. 2021 Jan 6;14:603765. doi: 10.3389/fncom.2020.603765. PMID: 33488374; PMCID: PMC7815934.

Chen R. Causal Network Inference for Neural Ensemble Activity. Neuroinformatics. 2021 Jan 4. doi: 10.1007/s12021-020-09505-4. Epub ahead of print. PMID: 33393054.

Dreizin D, Goldmann F, LeBedis C, Boscak A, Dattwyler M, Bodanapally U, Li G, Anderson S, Maier A, Unberath M. An Automated Deep Learning Method for Tile AO/OTA Pelvic Fracture Severity Grading from Trauma whole-Body CT. J Digit Imaging. 2021 Jan 21. doi: 10.1007/s10278-020-00399-x. Epub ahead of print. PMID: 33479859.

Dreizin D, Chen T, Liang Y, Zhou Y, Paes F, Wang Y, Yuille AL, Roth P, Champ K, Li G, McLenithan A, Morrison JJ. Added value of deep learning-based liver parenchymal CT volumetry for predicting major arterial injury after blunt hepatic trauma: a decision tree analysis. Abdom Radiol (NY). 2021 Jan 19. doi: 10.1007/s00261-020-02892-x. Epub ahead of print. PMID: 33469691.

Meeker TJ, Veldhuijzen DS, Keaser ML, Gullapalli RP, Greenspan JD. Menstrual Cycle Variations in Gray Matter Volume, White Matter Volume and Functional Connectivity: Critical Impact on Parietal Lobe. Front Neurosci. 2020 Dec 22;14:594588. doi: 10.3389/fnins.2020.594588. PMID: 33414702; PMCID: PMC7783210.

Kawasaki Y, Oishi K, Hernandez A, Ernst T, Wu D, Otsuka Y, Ceritoglu C, Chang L. Brain-derived neurotrophic factor Val66Met variant on brain volumes in infants. Brain Struct Funct. 2021 Jan 20. doi: 10.1007/s00429-020-02207-2. Epub ahead of print. PMID: 33474578.

Nir TM, Fouche JP, Ananworanich J, Ances BM, Boban J, Brew BJ, Chaganti JR, Chang L, Ching CRK, Cysique LA, Ernst T, Faskowitz J, Gupta V, Harezlak J, Heaps-Woodruff JM, Hinkin CH, Hoare J, Joska JA, Kallianpur KJ, Kuhn T, Lam HY, Law M, Lebrun-Frénay C, Levine AJ, Mondot L, Nakamoto BK, Navia BA, Pennec X, Porges EC, Salminen LE, Shikuma CM, Surento W, Thames AD, Valcour V, Vassallo M, Woods AJ, Thompson PM, Cohen RA, Paul R, Stein DJ, Jahanshad N. Association of Immunosuppression and Viral Load With Subcortical Brain Volume in an International Sample of People Living With HIV. JAMA Netw Open. 2021 Jan 4;4(1):e2031190. doi: 10.1001/jamanetworkopen.2020.31190. PMID: 33449093; PMCID: PMC7811179.

Janowski M. Guideomics to Live up to the Promise of Biotechnology for Precision Medicine of Brain Diseases. Advanced Science News. January 4, 2021.

2020 Publications

Liang Y, Walczak P. Long term intravital single cell tracking under multiphoton microscopy. J Neurosci Methods. 2020 Dec 16;349:109042. doi: 10.1016/j.jneumeth.2020.109042. Epub ahead of print. PMID: 33340557.

Ali Mohammadabadi A, Ahmed N, Frenkel V. Beam Characterization of a Custom, Handheld Focused Ultrasound System using Thermochromic Liquid Crystal Films. Med Devices Sens, December 2020.

Gao Y, Chu C, Jablonska A, Bulte JWM, Walczak P, Janowski M. Imaging as a tool to accelerate the translation of extracellular vesicle-based therapies for central nervous system diseases. Wiley Interdiscip Rev Nanomed Nanobiotechnol. 2020 Dec 17:e1688. doi: 10.1002/wnan.1688. Epub ahead of print. PMID: 33336512.

Dreizin D, Zhou Y, Fu S, Wang Y, Li G, Champ K, Siegel E, Wang Z, Chen T, Yuille AL. A Multiscale Deep Learning Method for Quantitative Visualization of Traumatic Hemoperitoneum at CT: Assessment of Feasibility and Comparison with Subjective Categorical Estimation. Radiol Artif Intell. 2020 Nov 11;2(6):e190220. doi: 10.1148/ryai.2020190220. PMID: 33330848; PMCID: PMC7706875.

Bhalla K, Jaber S, Reagan K, Hamburg A, Underwood KF, Jhajharia A, Singh M, Bhandary B, Bhat S, Nanaji NM, Hisa R, McCracken C, Creasy HH, Lapidus RG, Kingsbury T, Mayer D, Polster B, Gartenhaus RB. SIRT3, a metabolic target linked to ataxia-telangiectasia mutated (ATM) gene deficiency in diffuse large B-cell lymphoma. Sci Rep. 2020 Dec 3;10(1):21159. doi: 10.1038/s41598-020-78193-6. PMID: 33273545; PMCID: PMC7712916.

Hossain R, Chelala L, Sleilaty G, Amin S, Vairavamurthy J, Chen R, Gupta A, Jeudy J, White C. Preprocedure CT Findings of Right Heart Failure as a Predictor of Mortality After Transcatheter Aortic Valve Replacement. AJR Am J Roentgenol. 2020 Nov 10:1-9. doi: 10.2214/AJR.20.22894. Epub ahead of print. PMID: 33170737.

Dabrowska S, Andrzejewska A, Kozlowska H, Strzemecki D, Janowski M, Lukomska B. Neuroinflammation evoked by brain injury in a rat model of lacunar infarct. Exp Neurol. 2020 Nov 20:113531. doi: 10.1016/j.expneurol.2020.113531. Epub ahead of print. PMID: 33221395.

Waddell J, Hill E, Tang S, Jiang L, Xu S, Mooney SM. Choline Plus Working Memory Training Improves Prenatal Alcohol-Induced Deficits in Cognitive Flexibility and Functional Connectivity in Adulthood in Rats. Nutrients. 2020 Nov 14;12(11):3513. doi: 10.3390/nu12113513. PMID: 33202683; PMCID: PMC7696837.

Lin Y, He JJ, Sorensen R, Chang L. Unraveling neuroHIV in the Presence of Substance Use Disorders. J Neuroimmune Pharmacol. 2020 Dec;15(4):578-583. doi: 10.1007/s11481-020-09967-y. Epub 2020 Nov 20. PMID: 33215327.

Xie D, Li Y, Yang H, Bai L, Wang T, Zhou F, Zhang L, Wang Z. Denoising arterial spin labeling perfusion MRI with deep machine learning. Magn Reson Imaging. 2020 May;68:95-105. doi: 10.1016/j.mri.2020.01.005. Epub 2020 Jan 15. PMID: 31954173; PMCID: PMC7572130.

Li Y, Xie D, Cember A, Nanga RPR, Yang H, Kumar D, Hariharan H, Bai L, Detre JA, Reddy R, Wang Z. Accelerating GluCEST imaging using deep learning for B0 correction. Magn Reson Med. 2020 Oct;84(4):1724-1733. doi: 10.1002/mrm.28289. Epub 2020 Apr 17. PMID: 32301185.

Wang Z and for the Alzheimer’s Disease Neuroimaging Initiative. Brain Entropy Mapping in Healthy Aging and Alzheimer’s Disease. Front Aging Neurosci. 2020 Nov 10.

Ren S, Qian L, Daniels MJ, Duan S, Chen R, Wang Z. Evaluation of contrast-enhanced computed tomography for the differential diagnosis of hypovascular pancreatic neuroendocrine tumors from chronic mass-forming pancreatitis. Eur J Radiol. 2020 Oct 21;133:109360. doi: 10.1016/j.ejrad.2020.109360. Epub ahead of print. PMID: 33126171.

Golubczyk D, Kalkowski L, Kwiatkowska J, Zawadzki M, Holak P, Glodek J, Milewska K, Pomianowski A, Janowski M, Adamiak Z, Walczak P, Malysz-Cymborska I. Endovascular model of ischemic stroke in swine guided by real-time MRI. Sci Rep. 2020 Oct 14;10(1):17318. doi: 10.1038/s41598-020-74411-3. PMID: 33057149; PMCID: PMC7560864.

Chang L, Liang H, Kandel SR, He JJ. Independent and Combined Effects of Nicotine or Chronic Tobacco Smoking and HIV on the Brain: A Review of Preclinical and Clinical Studies. J Neuroimmune Pharmacol. 2020 Oct 27. doi: 10.1007/s11481-020-09963-2. Epub ahead of print. PMID: 33108618.

Chen R, Lee K, Herskovits EH. Computational framework for detection of subtypes of neuropsychiatric disorders based on DTI-derived anatomical connectivity. Neuroradiol J. 2020 Oct;33(5):393-399. doi: 10.1177/1971400920950694. PMID: 32894990; PMCID: PMC7482041.

Dreizin D, Rosales R, Li G, Syed H, Chen R. Volumetric Markers of Body Composition May Improve Personalized Prediction of Major Arterial Bleeding After Pelvic Fracture: A Secondary Analysis of the Baltimore CT Prediction Model Cohort. Can Assoc Radiol J. 2020 Sep 10:846537120952508. doi: 10.1177/0846537120952508. Epub ahead of print. PMID: 32910695.

Wiers CE, Cunningham SI, Tomasi DG, Ernst T, Chang L, Shokri-Kojori E, Wang GJ, Volkow ND. Elevated thalamic glutamate levels and reduced water diffusivity in alcohol use disorder: Association with impulsivity. Psychiatry Res Neuroimaging. 2020 Sep 10;305:111185. doi: 10.1016/j.pscychresns.2020.111185. Epub ahead of print. PMID: 32957041.

Iyer SR, Xu S, Shah SB, Lovering RM. Muscle phenotype of a rat model of Duchenne muscular dystrophy. Muscle Nerve. 2020 Sep 12. doi: 10.1002/mus.27061. Epub ahead of print. PMID: 32918339.

Su P, Guo S, Roys S, Maier F, Bhat H, Melhem ER, Gandhi D, Gullapalli R, Zhuo J. Transcranial MR Imaging-Guided Focused Ultrasound Interventions Using Deep Learning Synthesized CT. AJNR Am J Neuroradiol. 2020 Sep 3. doi: 10.3174/ajnr.A6758. Epub ahead of print. PMID: 32883668.

Ren S, Zhao R, Cui W, Qiu W, Guo K, Cao Y, Duan S, Wang Z, Chen R. Computed Tomography-Based Radiomics Signature for the Preoperative Differentiation of Pancreatic Adenosquamous Carcinoma From Pancreatic Ductal Adenocarcinoma. Front Oncol. 2020 Aug 25;10:1618. doi: 10.3389/fonc.2020.01618. PMID: 32984030; PMCID: PMC7477956.

Wang J, Ren S, Liu Y, Guo K, Chen X, Wang Z, Chen R. Carcinoid Tumorlets Co-Existing with Chronic Pulmonary Inflammatory Processes: Imaging Findings and Histological Appearances. Med Sci Monit. 2020 Sep 11;26:e926014. doi: 10.12659/MSM.926014. PMID: 32913178.

Davis DL, Almardawi R, Henn RF 3rd, Zhuo J, Mulligan ME, Resnik CS, Abdullah SB, Al Khalifah H, Gilotra MN, Hasan SA, Gullapalli RP. Correlation of Quantitative Versus Semiquantitative Measures of Supraspinatus Intramuscular Fatty Infiltration to Shoulder Range of Motion and Strength: A Pilot Study. Curr Probl Diagn Radiol. 2020 Jun 26:S0363-0188(20)30122-5. doi: 10.1067/j.cpradiol.2020.06.007. Epub ahead of print. PMID: 32654835.

Lee Y, Xie J, Lee E, Sudarsanan S, Lin DT, Chen R, Bhattacharyya SS. Real-Time Neuron Detection and Neural Signal Extraction Platform for Miniature Calcium Imaging. Front Comput Neurosci. 2020 Jun 26;14:43. doi: 10.3389/fncom.2020.00043. PMID: 32676021; PMCID: PMC7333463.

Machhi J, Herskovitz J, Senan AM, Dutta D, Nath B, Oleynikov MD, Blomberg WR, Meigs DD, Hasan M, Patel M, Kline P, Chang RC, Chang L, Gendelman HE, Kevadiya BD. The Natural History, Pathobiology, and Clinical Manifestations of SARS-CoV-2 Infections. J Neuroimmune Pharmacol. 2020 Jul 21:1–28. doi: 10.1007/s11481-020-09944-5. Epub ahead of print. PMID: 32696264; PMCID: PMC7373339.

Mohammadabadi A, Huynh RN, Wadajkar AS, Lapidus RG, Kim AJ, Raub CB, Frenkel V. Pulsed focused ultrasound lowers interstitial fluid pressure and increases nanoparticle delivery and penetration in head and neck squamous cell carcinoma xenograft tumors. Phys Med Biol. 2020 Jun 22;65(12):125017. doi: 10.1088/1361-6560/ab9705. PMID: 32460260.

Andrzejewska A, Dabrowska S, Nowak B, Walczak P, Lukomska B, Janowski M. Mesenchymal stem cells injected into carotid artery to target focal brain injury home to perivascular space. Theranostics. 2020 May 17;10(15):6615-6628. doi: 10.7150/thno.43169. PMID: 32550893; PMCID: PMC7295043.

Vieira S, Strymecka P, Stanaszek L, Silva-Correia J, Drela K, Fiedorowicz M, Malysz-Cymborska I, Rogujski P, Janowski M, Reis RL, Lukomska B, Walczak P, Oliveira JM. Methacrylated gellan gum and hyaluronic acid hydrogel blends for image-guided neurointerventions. J Mater Chem B. 2020 Jul 15;8(27):5928-5937. doi: 10.1039/d0tb00877j. PMID: 32542280.

Mullins RJ, Xu S, Zhuo J, Roys S, Pereira EFR, Albuquerque EX, Gullapalli RP. Postnatal Guinea Pig Brain Development, as Revealed by Magnetic Resonance and Diffusion Kurtosis Imaging. Brain Sci. 2020 Jun 12;10(6):365. doi: 10.3390/brainsci10060365. PMID: 32545593; PMCID: PMC7349860.

Beydoun MA, Shaked D, Hossain S, Beydoun HA, Katzel LI, Davatzikos C, Gullapalli RP, Seliger SL, Erus G, Evans MK, Zonderman AB, Waldstein SR. Vitamin D, Folate, and Cobalamin Serum Concentrations Are Related to Brain Volume and White Matter Integrity in Urban Adults. Front Aging Neurosci. 2020 May 25;12:140. doi: 10.3389/fnagi.2020.00140. PMID: 32523528; PMCID: PMC7261885.

Wu D, Chang L, Ernst TM, Caffo BS, Oishi K. Developmental score of the infant brain: characterizing diffusion MRI in term- and preterm-born infants [published online ahead of print, 2020 Aug 17]. Brain Struct Funct. 2020;10.1007/s00429-020-02132-4. doi:10.1007/s00429-020-02132-4

Park SL, Li Y, Sheng X, Hom V, Xia L, Zhao K, Pooler L, Setiawan VW, Lim U, Monroe KR, Wilkens LR, Kristal BS, Lampe JW, Hullar M, Shepherd J, Loo LLM, Ernst T, Franke AA, Tiirikainen M, Haiman CA, Stram DO, Le Marchand L, Cheng I. Genome-Wide Association Study of Liver Fat: The Multiethnic Cohort Adiposity Phenotype Study. Hepatol Commun. 2020 Jun 25;4(8):1112-1123. doi: 10.1002/hep4.1533. PMID: 32766472; PMCID: PMC7395069.

Wang HA, Liang HJ, Ernst TM, Oishi K, Chang L. Microstructural brain abnormalities in HIV+ individuals with or without chronic marijuana use. J Neuroinflammation. 2020 Aug 6;17(1):230. doi: 10.1186/s12974-020-01910-5. PMID: 32758262; PMCID: PMC7409464.

Liu Y, Wu W, Chen X, Wu M, Hu G, Zhou G, Wang Z, Chen R. Aberrant Correlation Between the Default Mode and Salience Networks in Mild Traumatic Brain Injury. Front Comput Neurosci. 2020 Jul 28;14:68. doi: 10.3389/fncom.2020.00068. PMID: 32848686; PMCID: PMC7399631.

Elegbede A, Diaconu S, Dreizin D, Li G, Dunlow R, Ngaage LM, Rasko Y, Liang F, Grant MP, Nam AJ. Low-Dose Computed Tomographic Scans for Postoperative Evaluation of Craniomaxillofacial Fractures: A Pilot Clinical Study. Plast Reconstr Surg. 2020 Aug;146(2):366-370. doi: 10.1097/PRS.0000000000007017. PMID: 32740589.

Xu S, Tang S, Li X, Iyer SR, Lovering RM. Abnormalities in Brain and Muscle Microstructure and Neurochemistry of the DMD Rat Measured by in vivo Diffusion Tensor Imaging and High Resolution Localized 1H MRS. Front Neurosci. 2020 Jul 14;14:739. doi: 10.3389/fnins.2020.00739. PMID: 32760246; PMCID: PMC7372970.

Xiaoyan Lan, MD, Postdoctoral Fellow, Chengyan Chu, MD, Postdoctoral Fellow, Anna Jablonska, PhD, Research Associate, Yajie Liang, MB, PhD, Assistant Professor, Miroslaw Janowski, MD, PhD, Associate Professor, and Piotr Walczak, MD, PhD, Professor (last author), all from the Department of Diagnostic Radiology and Nuclear Medicine, were among the coauthors of “Modeling Human Pediatric and Adult Gliomas in Immunocompetent Mice through Costimulatory Blockade,” which was published in OncoImmunology on June 5, 2020. [Epub ahead of print]

Andrzejewska A, Janowski M. Microfluidic Systems in CNS Studies. Adv Exp Med Biol. 2020;1230:87-95.

Boltze J, Abe K, Clarkson AN, Detante O, Pimentel-Coelho PM, Rosado-de-Castro PH, Janowski M. Editorial: Cell-based Therapies for Stroke: Promising Solution or Dead End? Front Neurol. 2020 Apr 3;11:171. eCollection 2020.

Chandrasekaran K, Choi J, Arvas MI, Salimian M, Singh S, Xu S, Gullapalli RP, Kristian T, Russell JW.  Nicotinamide Mononucleotide Administration Prevents Experimental Diabetes-Induced Cognitive Impairment and Loss of Hippocampal Neurons. Int J Mol Sci. 2020;21(11):E3756. Published 2020 May 26.

Chu C, Davis CM, Lan X, Hienz RD, Jablonska A, Thomas AM, Velarde E, Li S, Janowski M, Kai M, Walczak P. Neuroinflammation Following Stereotactic Radiosurgery-Induced Brain Tumor Disintegration Is Linked to Persistent Cognitive Decline in a Mouse Model of Metastatic Disease. Int J Radiat Oncol Biol Phys. 2020 May 26;S0360-3016(20)31151-2. Online ahead of print.

Hadavand MA, Mayer D, Chen W, Wnorowski A, Siddiqui MM. Role of Metabolic Imaging in Diagnosis of Primary, Metastatic, and Recurrent Prostate Cancer. Curr Opin Oncol. 2020 Mar 19. [Epub ahead of print]

Liang HJ, O'Connor EE, Ernst T, Oishi K, Cunningham E, Chang L. Greater Sensorimotor Deficits and Abnormally Lower Globus Pallidus Fractional Anisotropy in HIV+ Women than in HIV+ Men. J Neuroimmune Pharmacol. 2020 Apr 22. [Epub ahead of print]

Le Marchand L, Wilkens LR, Castelfranco AM, Monroe KR, Kristal BS, Cheng I, Maskarinec G, Hullar MA, Lampe JW, Shepherd JA, Franke A, Ernst T, Lim U. Circulating Biomarker Score for Visceral Fat and Risks of Incident Colorectal and Postmenopausal Breast Cancer: The Multiethnic Cohort Adiposity Phenotype Study. Cancer Epidemiol Biomarkers Prev. 2020 Mar 4. [Epub ahead of print]

Liang C, Shao Q, Zhang W, Yang M, Chang Q, Chen R, Chen JF. Smcr8 Deficiency Disrupts Axonal Transport-dependent Lysosomal Function and Promotes Axonal Swellings and Gain of Toxicity in C9ALS/FTD Mouse Models. Hum Mol Genet. 2020 Feb 14. [Epub ahead of print]

Maskarinec G, Namatame LA, Kang M, Buchthal SD, Ernst T, Monroe KR, Shepherd JA, Wilkens LR, Boushey CJ, Marchand LL, Lim U. Differences in the Association of Diet Quality with Body Fat Distribution between Men and Women. Eur J Clin Nutr. 2020 Jan 24. [Epub ahead of print]

Maziero D, Rondinoni C, Marins T, Stenger VA, Ernst T. Prospective motion correction of fMRI: Improving the quality of resting state data affected by large head motion. Neuroimage. 2020 Feb 7:116594. [Epub ahead of print]

Miller TR, Guo S, Melhem ER, Eisenberg HM, Zhuo J, Kelm N, Dayan M, Gullapalli RP, Gandhi D. Predicting Final Lesion Characteristics during MR-guided Focused Ultrasound Pallidotomy for Treatment of Parkinson's Disease. J Neurosurg. 2020 Apr 24:1-8 [Epub ahead of print]

Ren S, Zhao R, Zhang J, Guo K, Gu X, Duan S, Wang Z, Chen R. Diagnostic accuracy of unenhanced CT texture analysis to differentiate mass-forming pancreatitis from pancreatic ductal adenocarcinoma. Abdom Radiol (NY). 2020 May;45(5):1524-1533.

Saleh MG, Edden RAE, Chang L, Ernst T. Motion Correction in Magnetic Resonance Spectroscopy. Magn Reson Med. 2020 Apr 17. [Epub ahead of print]

Shi D, Xu S, Zhuo J, McKenna MC, Gullapalli RP. White Matter Alterations in Fmr1 Knockout Mice during Early Postnatal Brain Development. Dev Neurosci. 2020 Apr 29:1-16. [Epub ahead of print]